CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr15.884 rna-evm.model.Chr15.884 Chr15 25389050 25463721 PREDICTED: WASH complex subunit 4 GO:0071203 K18465
gene-evm.TU.Chr15.885 rna-evm.model.Chr15.885 Chr15 25474627 25547366 PREDICTED: Kruppel-like factor 18 nan K10631
gene-evm.TU.Chr15.886 rna-evm.model.Chr15.886 Chr15 25547731 25564135 PREDICTED: Pre-rRNA-processing protein TSR2 homolog nan K14800
gene-evm.TU.Chr15.887 rna-evm.model.Chr15.887 Chr15 25564180 25597748 PREDICTED: F-box/WD repeat-containing protein 7 GO:0005515 K10260
gene-evm.TU.Chr15.889 rna-evm.model.Chr15.889 Chr15 25614040 25645092 PREDICTED: Protein artemis nan K10887
gene-evm.TU.Chr15.89 rna-evm.model.Chr15.89 Chr15 1889315 1927483 PREDICTED: Protein Wnt-5a GO:0005102;GO:0005576;GO:0007275;GO:0016055 K00444
gene-evm.TU.Chr15.890 rna-evm.model.Chr15.890 Chr15 25645143 25665046 PREDICTED: Dihydrolipoyl dehydrogenase, mitochondrial GO:0016491;GO:0045454;GO:0055114 K00382
gene-evm.TU.Chr15.891 rna-evm.model.Chr15.891 Chr15 25674651 25716559 PREDICTED: Contactin GO:0005515 K06760
gene-evm.TU.Chr15.892 rna-evm.model.Chr15.892 Chr15 25733860 25746879 PREDICTED: E3 SUMO-protein ligase NSE2 GO:0000724;GO:0008270;GO:0019789;GO:0030915 K22756
gene-evm.TU.Chr15.893 rna-evm.model.Chr15.893 Chr15 25759226 25990565 PREDICTED: General transcription factor 3C polypeptide 1 nan K15199

For more detailed data, you can explore the Download section to access the full dataset.