CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr15.875 rna-evm.model.Chr15.875 Chr15 25049641 25053677 PREDICTED: Transmembrane protein 121B nan K05340
gene-evm.TU.Chr15.876 rna-evm.model.Chr15.876 Chr15 25057314 25064290 PREDICTED: Zinc finger protein 205 GO:0003676 K09214
gene-evm.TU.Chr15.877 rna-evm.model.Chr15.877 Chr15 25077362 25114383 PREDICTED: Protein tyrosine phosphatase domain-containing protein 1 GO:0004725;GO:0006470;GO:0008138;GO:0016311;GO:0016791 K18078
gene-evm.TU.Chr15.878 rna-evm.model.Chr15.878 Chr15 25117045 25135816 PREDICTED: G/T mismatch-specific thymine DNA glycosylase GO:0006281;GO:0019104 K20813
gene-evm.TU.Chr15.879 rna-evm.model.Chr15.879 Chr15 25150758 25160463 PREDICTED: Galectin-5 GO:0030246 K06832
gene-evm.TU.Chr15.88 rna-evm.model.Chr15.88 Chr15 1869169 1869636 PREDICTED: Uncharacterized protein PFD1115c nan K10060
gene-evm.TU.Chr15.880 rna-evm.model.Chr15.880 Chr15 25163182 25187480 PREDICTED: Galectin-4 GO:0030246 K06832
gene-evm.TU.Chr15.881 rna-evm.model.Chr15.881 Chr15 25227486 25240260 PREDICTED: Neuroendocrine convertase 1 GO:0004252;GO:0006508 K01359
gene-evm.TU.Chr15.882 rna-evm.model.Chr15.882 Chr15 25240282 25247577 PREDICTED: Minor extracellular protease vpr nan K01360
gene-evm.TU.Chr15.883 rna-evm.model.Chr15.883 Chr15 25291344 25353786 PREDICTED: Putative tetratricopeptide repeat protein 41 GO:0005515 K24944

For more detailed data, you can explore the Download section to access the full dataset.