CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr15.860 rna-evm.model.Chr15.860 Chr15 24496679 24496885 uncharacterized protein nan K14258
gene-evm.TU.Chr15.861 rna-evm.model.Chr15.861 Chr15 24506400 24511101 uncharacterized protein nan nan
gene-evm.TU.Chr15.862 rna-evm.model.Chr15.862 Chr15 24584447 24586897 PREDICTED: kinase suppressor of Ras 1 nan K20702
gene-evm.TU.Chr15.863 rna-evm.model.Chr15.863 Chr15 24593923 24597114 uncharacterized protein nan nan
gene-evm.TU.Chr15.864 rna-evm.model.Chr15.864 Chr15 24757380 24758760 PREDICTED: Potassium voltage-gated channel subfamily A member 1 GO:0005216;GO:0005249;GO:0006811;GO:0006813;GO:0008076;GO:0016020;GO:0055085 K04874
gene-evm.TU.Chr15.868 rna-evm.model.Chr15.868 Chr15 24895482 24896386 PREDICTED: OTU domain-containing protein 4 nan K13717
gene-evm.TU.Chr15.869 rna-evm.model.Chr15.869 Chr15 24919082 24949599 PREDICTED: Furin-like protease kpc-1 GO:0004252;GO:0006508 K01349
gene-evm.TU.Chr15.870 rna-evm.model.Chr15.870 Chr15 24968261 24996909 PREDICTED: Neurogenic locus Notch protein GO:0005509 K20994
gene-evm.TU.Chr15.871 rna-evm.model.Chr15.871 Chr15 25000712 25019812 PREDICTED: Neurogenic locus Notch protein GO:0005509 K20994
gene-evm.TU.Chr15.874 rna-evm.model.Chr15.874 Chr15 25025910 25032609 uncharacterized protein nan K06296

For more detailed data, you can explore the Download section to access the full dataset.