CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr15.85 rna-evm.model.Chr15.85 Chr15 1850110 1853993 PREDICTED: F-box/LRR-repeat protein 14 GO:0005515 K10280
gene-evm.TU.Chr15.850 rna-evm.model.Chr15.850 Chr15 23913382 23952066 uncharacterized protein nan K01104
gene-evm.TU.Chr15.851 rna-evm.model.Chr15.851 Chr15 23963366 23963692 uncharacterized protein nan K25470
gene-evm.TU.Chr15.852 rna-evm.model.Chr15.852 Chr15 23964314 24093902 PREDICTED: Integrator complex subunit 13 nan nan
gene-evm.TU.Chr15.853 rna-evm.model.Chr15.853 Chr15 24172954 24210934 PREDICTED: FMRFamide-activated amiloride-sensitive sodium channel GO:0005272;GO:0006814;GO:0016020 K04831
gene-evm.TU.Chr15.854 rna-evm.model.Chr15.854 Chr15 23963865 24297106 PREDICTED: Integrator complex subunit 13 nan nan
gene-evm.TU.Chr15.856 rna-evm.model.Chr15.856 Chr15 24308544 24389938 PREDICTED: Nuclear transcription factor Y subunit beta nan K08065
gene-evm.TU.Chr15.857 rna-evm.model.Chr15.857 Chr15 24398199 24402827 PREDICTED: ATP-dependent DNA helicase RecQ [EC:3.6.4.12] nan K10899
gene-evm.TU.Chr15.858 rna-evm.model.Chr15.858 Chr15 24430127 24464516 PREDICTED: Protein DD3-3 nan nan
gene-evm.TU.Chr15.859 rna-evm.model.Chr15.859 Chr15 24464760 24494149 PREDICTED: Protein DD3-3 nan nan

For more detailed data, you can explore the Download section to access the full dataset.