CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr15.832 rna-evm.model.Chr15.832 Chr15 23500829 23502499 PREDICTED: 3-beta-hydroxysteroid-Delta(8),Delta(7)-isomerase GO:0016020;GO:0016125;GO:0047750 K01824
gene-evm.TU.Chr15.833 rna-evm.model.Chr15.833 Chr15 23556236 23560058 uncharacterized protein nan K04729
gene-evm.TU.Chr15.834 rna-evm.model.Chr15.834 Chr15 23584618 23635852 PREDICTED: MSCRAMM family adhesin clumping factor ClfB, partial nan K05456
gene-evm.TU.Chr15.835 rna-evm.model.Chr15.835 Chr15 23648718 23684776 PREDICTED: Ankyrin repeat domain-containing protein 16 GO:0005515 K15503
gene-evm.TU.Chr15.836 rna-evm.model.Chr15.836 Chr15 23690869 23705483 PREDICTED: Plasminogen nan K05122
gene-evm.TU.Chr15.837 rna-evm.model.Chr15.837 Chr15 23721678 23744844 PREDICTED: Uncharacterized protein C3orf67 homolog nan K13749
gene-evm.TU.Chr15.838 rna-evm.model.Chr15.838 Chr15 23744886 23745458 PREDICTED: Zinc finger protein 862 nan K24642
gene-evm.TU.Chr15.839 rna-evm.model.Chr15.839 Chr15 23748054 23768353 PREDICTED: Uncharacterized protein C3orf67 homolog nan nan
gene-evm.TU.Chr15.84 rna-evm.model.Chr15.84 Chr15 1826275 1838982 PREDICTED: Aminoacylase-1 GO:0016787 K14677
gene-evm.TU.Chr15.842_evm.TU.Chr15.843 rna-evm.model.Chr15.842_evm.model.Chr15.843 Chr15 23799703 23878962 PREDICTED: E3 ubiquitin-protein ligase MIB2 GO:0003950;GO:0004842;GO:0005515;GO:0008270;GO:0016567;GO:0046872 K10645

For more detailed data, you can explore the Download section to access the full dataset.