CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr15.819 rna-evm.model.Chr15.819 Chr15 23202756 23203631 PREDICTED: solute carrier family 15, member 5 nan K07497
gene-evm.TU.Chr15.820 rna-evm.model.Chr15.820 Chr15 23209872 23210609 PREDICTED: Mitogen-activated protein kinase kinase kinase YODA GO:0004672;GO:0005524;GO:0006468 K04427
gene-evm.TU.Chr15.821 rna-evm.model.Chr15.821 Chr15 23210722 23215998 PREDICTED: Signaling mucin HKR1 nan K14590
gene-evm.TU.Chr15.822 rna-evm.model.Chr15.822 Chr15 23218872 23221213 PREDICTED: Cystinosin homolog nan K23678
gene-evm.TU.Chr15.824 rna-evm.model.Chr15.824.2 Chr15 23237612 23262502 PREDICTED: Ankyrin-3 GO:0005515 K02580
gene-evm.TU.Chr15.825 rna-evm.model.Chr15.825 Chr15 23267673 23324205 PREDICTED: DNA (cytosine-5)-methyltransferase 3B nan K17399
gene-evm.TU.Chr15.826 rna-evm.model.Chr15.826 Chr15 23340328 23367579 PREDICTED: Optineurin GO:0070530 K19946
gene-evm.TU.Chr15.828 rna-evm.model.Chr15.828 Chr15 23380139 23393133 PREDICTED: Putative ankyrin repeat protein FPV246 GO:0005515 K04984
gene-evm.TU.Chr15.83 rna-evm.model.Chr15.83 Chr15 1774471 1804556 PREDICTED: Germinal-center associated nuclear protein nan K24317
gene-evm.TU.Chr15.830 rna-evm.model.Chr15.830 Chr15 23402256 23478067 PREDICTED: Inosine-5'-monophosphate dehydrogenase 1a GO:0003824;GO:0055114 K00088

For more detailed data, you can explore the Download section to access the full dataset.