CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr15.808 rna-evm.model.Chr15.808 Chr15 22908914 22911367 PREDICTED: solute carrier family 25 (mitochondrial carnitine/acylcarnitine transporter), member 20/29 nan K10395
gene-evm.TU.Chr15.809 rna-evm.model.Chr15.809 Chr15 22947091 22984532 PREDICTED: Proton myo-inositol cotransporter GO:0016020;GO:0016020;GO:0022857;GO:0055085 K08150
gene-evm.TU.Chr15.81 rna-evm.model.Chr15.81 Chr15 1745550 1745864 uncharacterized protein nan nan
gene-evm.TU.Chr15.810 rna-evm.model.Chr15.810 Chr15 22993066 22998723 uncharacterized protein nan nan
gene-evm.TU.Chr15.811 rna-evm.model.Chr15.811 Chr15 23000338 23022594 PREDICTED: Inter-alpha-trypsin inhibitor heavy chain H4 nan K24513
gene-evm.TU.Chr15.812 rna-evm.model.Chr15.812 Chr15 23032642 23045100 uncharacterized protein nan K11244
gene-evm.TU.Chr15.813 rna-evm.model.Chr15.813 Chr15 23048690 23049271 PREDICTED: Polysialic acid O-acetyltransferase nan K14590
gene-evm.TU.Chr15.815 rna-evm.model.Chr15.815 Chr15 23063798 23086169 PREDICTED: E3 ubiquitin-protein ligase UHRF1 nan K10638
gene-evm.TU.Chr15.817 rna-evm.model.Chr15.817 Chr15 23165247 23189499 uncharacterized protein nan K24166
gene-evm.TU.Chr15.818 rna-evm.model.Chr15.818 Chr15 23191096 23202224 PREDICTED: Zygote arrest protein 1 nan K18762

For more detailed data, you can explore the Download section to access the full dataset.