CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr15.796 rna-evm.model.Chr15.796.1 Chr15 22521513 22537943 PREDICTED: Leucine dehydrogenase GO:0006520;GO:0016491;GO:0016639;GO:0055114 K00263
gene-evm.TU.Chr15.797 rna-evm.model.Chr15.797 Chr15 22545449 22546507 PREDICTED: Probable G-protein coupled receptor B0563.6 GO:0004930;GO:0007186;GO:0016020 K04284
gene-evm.TU.Chr15.798 rna-evm.model.Chr15.798 Chr15 22551385 22565588 PREDICTED: ATP-binding cassette sub-family D member 1 GO:0005524;GO:0005778;GO:0006635;GO:0016020;GO:0016887;GO:0042626;GO:0055085 K05676
gene-evm.TU.Chr15.799 rna-evm.model.Chr15.799 Chr15 22570219 22572306 uncharacterized protein nan K17527
gene-evm.TU.Chr15.80 rna-evm.model.Chr15.80 Chr15 1733814 1734755 PREDICTED: Tigger transposable element-derived protein 1 GO:0003676 K22594
gene-evm.TU.Chr15.800 rna-evm.model.Chr15.800 Chr15 22573474 22601388 PREDICTED: Uncharacterized protein C12orf40 nan nan
gene-evm.TU.Chr15.803 rna-evm.model.Chr15.803 Chr15 22708815 22710664 PREDICTED: Three-prime repair exonuclease 1 nan K02342
gene-evm.TU.Chr15.805 rna-evm.model.Chr15.805 Chr15 22788370 22796368 PREDICTED: Galectin-5 GO:0030246 K06832
gene-evm.TU.Chr15.806 rna-evm.model.Chr15.806 Chr15 22824451 22824734 uncharacterized protein nan nan
gene-evm.TU.Chr15.807 rna-evm.model.Chr15.807 Chr15 22887264 22890397 PREDICTED: Collectin-12 nan K17513

For more detailed data, you can explore the Download section to access the full dataset.