CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr15.785 rna-evm.model.Chr15.785 Chr15 22214589 22217800 PREDICTED: Carbohydrate sulfotransferase 3 GO:0008146 K01022
gene-evm.TU.Chr15.786 rna-evm.model.Chr15.786 Chr15 22219702 22228207 PREDICTED: Cyclic GMP-binding protein C nan K08844
gene-evm.TU.Chr15.787 rna-evm.model.Chr15.787 Chr15 22257528 22267096 PREDICTED: Beta-1,3-galactosyltransferase 1 GO:0006486;GO:0008378;GO:0016020 K07819
gene-evm.TU.Chr15.788 rna-evm.model.Chr15.788 Chr15 22284686 22327096 PREDICTED: Glutamate receptor-interacting protein 1 GO:0005515 K20251
gene-evm.TU.Chr15.789 rna-evm.model.Chr15.789 Chr15 22339534 22404947 PREDICTED: Tubulin monoglycylase TTLL3 GO:0036211 K16608
gene-evm.TU.Chr15.79 rna-evm.model.Chr15.79 Chr15 1672967 1678140 PREDICTED: BTB/POZ domain-containing protein 6 GO:0005515 K10478
gene-evm.TU.Chr15.790 rna-evm.model.Chr15.790 Chr15 22408978 22432966 PREDICTED: HAUS augmin-like complex subunit 7 GO:0051011 K16590
gene-evm.TU.Chr15.791 rna-evm.model.Chr15.791 Chr15 22436080 22436925 uncharacterized protein GO:0000122;GO:0004861;GO:0005634;GO:0005737;GO:0017069 K15189
gene-evm.TU.Chr15.792 rna-evm.model.Chr15.792 Chr15 22439568 22452812 PREDICTED: Interferon-related developmental regulator 1 nan K23336
gene-evm.TU.Chr15.795 rna-evm.model.Chr15.795 Chr15 22497129 22521310 PREDICTED: Protein maelstrom homolog GO:0060964 K18411

For more detailed data, you can explore the Download section to access the full dataset.