CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr1.2356 rna-evm.model.Chr1.2356 Chr1 74011526 74023900 PREDICTED: Deoxynucleoside triphosphate triphosphohydrolase SAMHD1 nan K22544
gene-evm.TU.Chr1.2357 rna-evm.model.Chr1.2357 Chr1 74024061 74030519 PREDICTED: Deoxynucleoside triphosphate triphosphohydrolase SAMHD1 nan K22544
gene-evm.TU.Chr1.2358 rna-evm.model.Chr1.2358 Chr1 74046560 74084509 PREDICTED: TBC1 domain family member 1 GO:0005515 K18341
gene-evm.TU.Chr1.2359 rna-evm.model.Chr1.2359 Chr1 74085564 74147315 PREDICTED: Ubiquitin carboxyl-terminal hydrolase isozyme L3 GO:0004843;GO:0006511 K05609
gene-evm.TU.Chr1.2360 rna-evm.model.Chr1.2360 Chr1 74166547 74171007 PREDICTED: Dendritic arbor reduction protein 1 GO:0003676;GO:0003700;GO:0006355 K09206
gene-evm.TU.Chr1.2361 rna-evm.model.Chr1.2361 Chr1 74183018 74244628 PREDICTED: Phosphoribosylformylglycinamidine synthase nan K01952
gene-evm.TU.Chr1.2363 rna-evm.model.Chr1.2363 Chr1 74260390 74268205 PREDICTED: Iduronate 2-sulfatase GO:0008484 K01136
gene-evm.TU.Chr1.2364 rna-evm.model.Chr1.2364 Chr1 74271131 74295620 PREDICTED: Protocadherin-11 X-linked GO:0005509;GO:0007156;GO:0016020 K16498
gene-evm.TU.Chr1.2365 rna-evm.model.Chr1.2365 Chr1 74339452 74344427 uncharacterized protein nan nan
gene-evm.TU.Chr1.2366 rna-evm.model.Chr1.2366 Chr1 74445130 74470093 PREDICTED: Protocadherin-9 GO:0005509;GO:0007156;GO:0016020 K16498

For more detailed data, you can explore the Download section to access the full dataset.