CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr15.766 rna-evm.model.Chr15.766 Chr15 21722129 21763376 PREDICTED: Inter-alpha-trypsin inhibitor heavy chain H3 GO:0004867;GO:0030212 K24513
gene-evm.TU.Chr15.767 rna-evm.model.Chr15.767 Chr15 21765374 21776498 PREDICTED: Inter-alpha-trypsin inhibitor heavy chain H3 GO:0004867;GO:0030212 K24513
gene-evm.TU.Chr15.768 rna-evm.model.Chr15.768 Chr15 21784222 21795856 PREDICTED: Laccase-24 GO:0005507;GO:0016491;GO:0055114 K00423
gene-evm.TU.Chr15.769 rna-evm.model.Chr15.769 Chr15 21802943 21815354 PREDICTED: Protein lifeguard 4 nan K24205
gene-evm.TU.Chr15.77 rna-evm.model.Chr15.77 Chr15 1656903 1658616 PREDICTED: PI-PLC X domain-containing protein 2 nan K01771
gene-evm.TU.Chr15.770 rna-evm.model.Chr15.770.3 Chr15 21930577 21953752 PREDICTED: IQ motif and SEC7 domain-containing protein 1 GO:0005085;GO:0005515;GO:0032012 K12495
gene-evm.TU.Chr15.771 rna-evm.model.Chr15.771 Chr15 21959826 21974467 PREDICTED: C-factor nan K17644
gene-evm.TU.Chr15.772 rna-evm.model.Chr15.772 Chr15 21991859 22010325 PREDICTED: Alpha-mannosidase 2x GO:0004559;GO:0006013 K01231
gene-evm.TU.Chr15.773 rna-evm.model.Chr15.773 Chr15 22012937 22026233 PREDICTED: Metabotropic glutamate receptor 2 GO:0004930;GO:0007186;GO:0016020 K04605
gene-evm.TU.Chr15.774 rna-evm.model.Chr15.774 Chr15 22046977 22060345 uncharacterized protein nan nan

For more detailed data, you can explore the Download section to access the full dataset.