CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr15.755 rna-evm.model.Chr15.755 Chr15 21518162 21526414 uncharacterized protein nan nan
gene-evm.TU.Chr15.757 rna-evm.model.Chr15.757 Chr15 21547033 21547598 PREDICTED: Tigger transposable element-derived protein 6 GO:0003676 K11496
gene-evm.TU.Chr15.758 rna-evm.model.Chr15.758 Chr15 21549969 21562528 PREDICTED: E3 ubiquitin-protein ligase RNF180 [EC:2.3.2.27] GO:0000209;GO:0061630 K15708
gene-evm.TU.Chr15.759 rna-evm.model.Chr15.759 Chr15 21572344 21573304 PREDICTED: exosome complex exonuclease DIS3/RRP44 [EC:3.1.13.-] nan K10400
gene-evm.TU.Chr15.76 rna-evm.model.Chr15.76 Chr15 1632382 1655405 PREDICTED: Small integral membrane protein 4 nan K27340
gene-evm.TU.Chr15.760 rna-evm.model.Chr15.760 Chr15 21609180 21609521 uncharacterized protein nan K07499
gene-evm.TU.Chr15.762 rna-evm.model.Chr15.762 Chr15 21617581 21624846 PREDICTED: Mariner Mos1 transposase nan K07494
gene-evm.TU.Chr15.763 rna-evm.model.Chr15.763 Chr15 21626192 21627397 PREDICTED: Lactosylceramide 1,3-N-acetyl-beta-D-glucosaminyltransferase A GO:0006486;GO:0008378;GO:0016020 K07819
gene-evm.TU.Chr15.764 rna-evm.model.Chr15.764 Chr15 21638453 21652342 PREDICTED: Acetylgalactosaminyl-O-glycosyl-glycoprotein beta-1,3-N-acetylglucosaminyltransferase GO:0006486;GO:0008378;GO:0016020 K07819
gene-evm.TU.Chr15.765 rna-evm.model.Chr15.765 Chr15 21679782 21715262 PREDICTED: Acetylgalactosaminyl-O-glycosyl-glycoprotein beta-1,3-N-acetylglucosaminyltransferase GO:0006486;GO:0008378;GO:0016020 K07819

For more detailed data, you can explore the Download section to access the full dataset.