CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr15.744 rna-evm.model.Chr15.744 Chr15 21091958 21095238 PREDICTED: N-acyl-phosphatidylethanolamine-hydrolyzing phospholipase D nan K13985
gene-evm.TU.Chr15.745 rna-evm.model.Chr15.745 Chr15 21099104 21105139 PREDICTED: Calmodulin GO:0005509 K25390
gene-evm.TU.Chr15.746 rna-evm.model.Chr15.746 Chr15 21108769 21111805 uncharacterized protein nan nan
gene-evm.TU.Chr15.748 rna-evm.model.Chr15.748 Chr15 21161184 21180876 PREDICTED: Dystroglycan GO:0007016;GO:0016010;GO:0016020 K06265
gene-evm.TU.Chr15.749 rna-evm.model.Chr15.749 Chr15 21254849 21263143 uncharacterized protein nan nan
gene-evm.TU.Chr15.75 rna-evm.model.Chr15.75 Chr15 1624210 1629357 PREDICTED: trichohyalin nan K12575
gene-evm.TU.Chr15.750 rna-evm.model.Chr15.750 Chr15 21282277 21284198 PREDICTED: Trihelix transcription factor GT-4 nan nan
gene-evm.TU.Chr15.751 rna-evm.model.Chr15.751 Chr15 21284271 21305269 uncharacterized protein nan K08599
gene-evm.TU.Chr15.753 rna-evm.model.Chr15.753 Chr15 21338635 21388042 PREDICTED: Leucine-rich repeats and immunoglobulin-like domains protein 3 GO:0005515 K24610
gene-evm.TU.Chr15.754 rna-evm.model.Chr15.754 Chr15 21419432 21457796 PREDICTED: Probable glutathione S-transferase 8 GO:0005515 K04097

For more detailed data, you can explore the Download section to access the full dataset.