CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr15.706 rna-evm.model.Chr15.706 Chr15 20304033 20305895 PREDICTED: Caveolin-1 GO:0070836 K12959
gene-evm.TU.Chr15.707 rna-evm.model.Chr15.707 Chr15 20308250 20311821 PREDICTED: Caveolin-1 GO:0070836 K12959
gene-evm.TU.Chr15.708 rna-evm.model.Chr15.708 Chr15 20314109 20316662 PREDICTED: Caveolin-1 GO:0070836 K12959
gene-evm.TU.Chr15.71 rna-evm.model.Chr15.71 Chr15 1559385 1562178 PREDICTED: Pogo transposable element with KRAB domain nan K22594
gene-evm.TU.Chr15.711 rna-evm.model.Chr15.711 Chr15 20344982 20346831 PREDICTED: Caveolin-1 GO:0070836 K12959
gene-evm.TU.Chr15.714 rna-evm.model.Chr15.714 Chr15 20368590 20372571 PREDICTED: Caveolin-1 GO:0070836 K12959
gene-evm.TU.Chr15.715 rna-evm.model.Chr15.715 Chr15 20372617 20373048 PREDICTED: palmitoyltransferase ZDHHC13/17 [EC:2.3.1.225] GO:0003676 K22594
gene-evm.TU.Chr15.717 rna-evm.model.Chr15.717 Chr15 20386348 20449686 PREDICTED: Voltage-dependent calcium channel subunit alpha-2/delta-2 nan K04858
gene-evm.TU.Chr15.719_evm.TU.Chr15.718 rna-evm.model.Chr15.719_evm.model.Chr15.718 Chr15 20479956 20575805 PREDICTED: mRNA-decapping enzyme 1B GO:0000290;GO:0008047;GO:0043085 K12611
gene-evm.TU.Chr15.72 rna-evm.model.Chr15.72 Chr15 1567112 1591476 PREDICTED: DNA repair protein complementing XP-C cells GO:0003677;GO:0003684;GO:0005634;GO:0006289 K10838

For more detailed data, you can explore the Download section to access the full dataset.