CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr15.697 rna-evm.model.Chr15.697 Chr15 20261649 20263100 PREDICTED: Caveolin-1 GO:0070836 K12959
gene-evm.TU.Chr15.698 rna-evm.model.Chr15.698 Chr15 20266185 20268716 PREDICTED: Caveolin-1 GO:0070836 K12959
gene-evm.TU.Chr15.699 rna-evm.model.Chr15.699 Chr15 20272166 20273018 PREDICTED: Caveolin-1 GO:0070836 K12959
gene-evm.TU.Chr15.70 rna-evm.model.Chr15.70 Chr15 1516455 1551018 PREDICTED: Protein mono-ADP-ribosyltransferase PARP14 GO:0003676;GO:0003950 K15261
gene-evm.TU.Chr15.700 rna-evm.model.Chr15.700 Chr15 20274607 20276964 PREDICTED: Caveolin-1 GO:0070836 K12959
gene-evm.TU.Chr15.701 rna-evm.model.Chr15.701 Chr15 20278044 20279689 PREDICTED: Caveolin-1 GO:0070836 K12959
gene-evm.TU.Chr15.702 rna-evm.model.Chr15.702 Chr15 20279930 20281480 uncharacterized protein nan nan
gene-evm.TU.Chr15.703 rna-evm.model.Chr15.703 Chr15 20285576 20286644 PREDICTED: Caveolin-1 GO:0070836 K12959
gene-evm.TU.Chr15.704 rna-evm.model.Chr15.704 Chr15 20289512 20291314 PREDICTED: Caveolin-1 GO:0070836 K12959
gene-evm.TU.Chr15.705 rna-evm.model.Chr15.705 Chr15 20293762 20295458 PREDICTED: Caveolin-1 GO:0070836 K12959

For more detailed data, you can explore the Download section to access the full dataset.