CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr1.2344 rna-evm.model.Chr1.2344 Chr1 73298923 73442380 PREDICTED: Rho-associated protein kinase 2 [EC:2.7.11.1] GO:0005741;GO:0035694 K06406
gene-evm.TU.Chr1.2346 rna-evm.model.Chr1.2346 Chr1 73498699 73597376 PREDICTED: Hyalin (Fragment) GO:0005515 K24469
gene-evm.TU.Chr1.2348 rna-evm.model.Chr1.2348 Chr1 73626647 73724857 PREDICTED: Wnt inhibitory factor 1 GO:0005515 K04550
gene-evm.TU.Chr1.2349 rna-evm.model.Chr1.2349 Chr1 73727555 73729593 PREDICTED: 2-oxoglutarate-dependent dioxygenase citB GO:0016491;GO:0055114 K04125
gene-evm.TU.Chr1.2350 rna-evm.model.Chr1.2350 Chr1 73734189 73735521 PREDICTED: Isopenicillin N synthase GO:0016491;GO:0055114 K04125
gene-evm.TU.Chr1.2351 rna-evm.model.Chr1.2351 Chr1 73774338 73791639 PREDICTED: Leucine-rich repeat-containing protein 74A GO:0005515 K20865
gene-evm.TU.Chr1.2352 rna-evm.model.Chr1.2352.1 Chr1 73804694 73875579 PREDICTED: Putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13 nan K13718
gene-evm.TU.Chr1.2353 rna-evm.model.Chr1.2353 Chr1 73879622 73919559 PREDICTED: Transcription factor SPT20 homolog GO:0000124;GO:0003712 K21245
gene-evm.TU.Chr1.2354 rna-evm.model.Chr1.2354 Chr1 73928988 73939532 PREDICTED: Deoxynucleoside triphosphate triphosphohydrolase SAMHD1 nan K22544
gene-evm.TU.Chr1.2355 rna-evm.model.Chr1.2355 Chr1 73949016 73958760 PREDICTED: Deoxynucleoside triphosphate triphosphohydrolase SAMHD1 nan K22544

For more detailed data, you can explore the Download section to access the full dataset.