CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr15.670 rna-evm.model.Chr15.670 Chr15 19593557 19601484 PREDICTED: Universal stress protein in QAH/OAS sulfhydrylase 3'region nan K06149
gene-evm.TU.Chr15.671 rna-evm.model.Chr15.671 Chr15 19603752 19617575 PREDICTED: Universal stress protein Sll1388 nan K14061
gene-evm.TU.Chr15.672 rna-evm.model.Chr15.672.1 Chr15 19627575 19658489 PREDICTED: Alpha-L-fucosidase GO:0004560;GO:0005975;GO:0006004 K01206
gene-evm.TU.Chr15.674 rna-evm.model.Chr15.674 Chr15 19702122 19775752 PREDICTED: Laccase-7 GO:0005507;GO:0016491;GO:0055114 K05909
gene-evm.TU.Chr15.676 rna-evm.model.Chr15.676 Chr15 19800307 19823730 PREDICTED: jagged-1 nan K24469
gene-evm.TU.Chr15.677_evm.TU.Chr15.678 rna-evm.model.Chr15.677_evm.model.Chr15.678 Chr15 19826609 19876667 PREDICTED: Hyalin (Fragment) GO:0005515;GO:0005576;GO:0030414 K24469
gene-evm.TU.Chr15.679 rna-evm.model.Chr15.679 Chr15 19889266 19892029 PREDICTED: Fez family zinc finger protein 2 GO:0003676 K24502
gene-evm.TU.Chr15.68 rna-evm.model.Chr15.68 Chr15 1492749 1501723 uncharacterized protein nan K06592
gene-evm.TU.Chr15.680 rna-evm.model.Chr15.680 Chr15 19932346 19940083 PREDICTED: tRNA methyltransferase 10 homolog C nan K17654
gene-evm.TU.Chr15.682 rna-evm.model.Chr15.682 Chr15 19958403 19975091 uncharacterized protein nan K19710

For more detailed data, you can explore the Download section to access the full dataset.