CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr15.651 rna-evm.model.Chr15.651 Chr15 19218835 19219545 uncharacterized protein nan K18375
gene-evm.TU.Chr15.652 rna-evm.model.Chr15.652 Chr15 19219821 19236936 PREDICTED: VWFA and cache domain-containing protein 1 nan K04860
gene-evm.TU.Chr15.653 rna-evm.model.Chr15.653 Chr15 19246684 19252682 PREDICTED: Viral A-type inclusion protein repeat, putative nan K06674
gene-evm.TU.Chr15.654 rna-evm.model.Chr15.654 Chr15 19263762 19293423 PREDICTED: Putative deoxyribonuclease TATDN2 GO:0016788 K03424
gene-evm.TU.Chr15.655 rna-evm.model.Chr15.655 Chr15 19288907 19289593 uncharacterized protein nan K10804
gene-evm.TU.Chr15.656 rna-evm.model.Chr15.656 Chr15 19304567 19334995 PREDICTED: Zinc finger protein 292 GO:0003676 nan
gene-evm.TU.Chr15.657 rna-evm.model.Chr15.657 Chr15 19341239 19350033 PREDICTED: Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 GO:0004579;GO:0005783;GO:0006486;GO:0016020 K12666
gene-evm.TU.Chr15.658 rna-evm.model.Chr15.658 Chr15 19350323 19392383 PREDICTED: Importin-9 GO:0006886;GO:0031267 K20224
gene-evm.TU.Chr15.659 rna-evm.model.Chr15.659 Chr15 19401992 19440151 PREDICTED: Ras association domain-containing protein 1 GO:0007165 K09850
gene-evm.TU.Chr15.66 rna-evm.model.Chr15.66 Chr15 1474089 1481571 PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3 nan K09008

For more detailed data, you can explore the Download section to access the full dataset.