CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr15.660 rna-evm.model.Chr15.660 Chr15 19458741 19459672 PREDICTED: Ras association domain-containing protein 1 GO:0035556 K09850
gene-evm.TU.Chr15.661 rna-evm.model.Chr15.661 Chr15 19467646 19472343 PREDICTED: Isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial (Fragment) GO:0016616;GO:0055114 K00030
gene-evm.TU.Chr15.662 rna-evm.model.Chr15.662 Chr15 19473906 19482430 PREDICTED: Isocitrate dehydrogenase [NAD] subunit gamma 1, mitochondrial GO:0016616;GO:0055114 K00030
gene-evm.TU.Chr15.663 rna-evm.model.Chr15.663 Chr15 19482378 19488312 PREDICTED: Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit A GO:0005515 K21440
gene-evm.TU.Chr15.664 rna-evm.model.Chr15.664 Chr15 19494696 19509426 PREDICTED: dentin sialophosphoprotein-like nan K11244
gene-evm.TU.Chr15.666 rna-evm.model.Chr15.666 Chr15 19555305 19558479 PREDICTED: acidic leucine-rich nuclear phosphoprotein 32 family member A/C/D GO:0003677 K10750
gene-evm.TU.Chr15.667 rna-evm.model.Chr15.667 Chr15 19571978 19577451 PREDICTED: Universal stress protein Sll1388 nan K06149
gene-evm.TU.Chr15.668 rna-evm.model.Chr15.668 Chr15 19582607 19586720 PREDICTED: Universal stress protein Sll1388 nan K14061
gene-evm.TU.Chr15.669 rna-evm.model.Chr15.669 Chr15 19589084 19593146 PREDICTED: Universal stress protein A-like protein nan K06149
gene-evm.TU.Chr15.67 rna-evm.model.Chr15.67 Chr15 1484874 1490239 PREDICTED: MTRF1L release factor glutamine methyltransferase GO:0008168 K02493

For more detailed data, you can explore the Download section to access the full dataset.