CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr15.642 rna-evm.model.Chr15.642 Chr15 19012048 19037038 PREDICTED: Matrilin-2 GO:0005509 K06825
gene-evm.TU.Chr15.643 rna-evm.model.Chr15.643 Chr15 19041173 19058868 PREDICTED: Histone deacetylase 6 nan K11407
gene-evm.TU.Chr15.644 rna-evm.model.Chr15.644 Chr15 19059936 19078628 PREDICTED: Polyamine deacetylase HDAC10 nan K11407
gene-evm.TU.Chr15.645 rna-evm.model.Chr15.645 Chr15 19086160 19091921 PREDICTED: Proteasome subunit alpha type-5 GO:0004175;GO:0004298;GO:0005839;GO:0006511;GO:0019773;GO:0051603 K02729
gene-evm.TU.Chr15.646 rna-evm.model.Chr15.646 Chr15 19102504 19137056 PREDICTED: F-box DNA helicase 1 GO:0003677;GO:0003678;GO:0005515;GO:0005524;GO:0016787 K10300
gene-evm.TU.Chr15.647 rna-evm.model.Chr15.647 Chr15 19145259 19152508 PREDICTED: Zinc finger protein 79 GO:0003676 K09191
gene-evm.TU.Chr15.648 rna-evm.model.Chr15.648 Chr15 19159178 19168075 PREDICTED: Sentrin-specific protease 8 GO:0006508;GO:0008234 K08597
gene-evm.TU.Chr15.649 rna-evm.model.Chr15.649 Chr15 19174992 19183262 PREDICTED: Protein SPEC3 nan K01698
gene-evm.TU.Chr15.65 rna-evm.model.Chr15.65 Chr15 1465001 1468728 PREDICTED: Serine protease 23 GO:0004252;GO:0006508 K09627
gene-evm.TU.Chr15.650 rna-evm.model.Chr15.650 Chr15 19193738 19218726 PREDICTED: VWFA and cache domain-containing protein 1 nan K04858

For more detailed data, you can explore the Download section to access the full dataset.