CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr15.630 rna-evm.model.Chr15.630 Chr15 18629821 18640225 PREDICTED: Rabenosyn-5 GO:0003676;GO:0046872 K12481
gene-evm.TU.Chr15.632 rna-evm.model.Chr15.632 Chr15 18664051 18667678 PREDICTED: PRA1 family protein 2 nan K20392
gene-evm.TU.Chr15.633 rna-evm.model.Chr15.633 Chr15 18671952 18721086 PREDICTED: Serine/threonine-protein kinase mTOR GO:0004674;GO:0005515;GO:0044877 K07203
gene-evm.TU.Chr15.634 rna-evm.model.Chr15.634 Chr15 18728335 18774719 PREDICTED: Protein shifted nan K01691
gene-evm.TU.Chr15.635 rna-evm.model.Chr15.635 Chr15 18871374 18879350 uncharacterized protein nan K25392
gene-evm.TU.Chr15.637 rna-evm.model.Chr15.637 Chr15 18888985 18891588 PREDICTED: Sushi, von Willebrand factor type A, EGF and pentraxin domain-containing protein 1 nan K24469
gene-evm.TU.Chr15.638 rna-evm.model.Chr15.638 Chr15 18895800 18916608 PREDICTED: Probable serine/threonine-protein kinase nek3 GO:0004672;GO:0005524;GO:0006468 K08857
gene-evm.TU.Chr15.639 rna-evm.model.Chr15.639 Chr15 18923141 18952821 PREDICTED: Glucose-6-phosphate 1-dehydrogenase X GO:0004345;GO:0006006;GO:0016614;GO:0050661;GO:0055114 K00036
gene-evm.TU.Chr15.640 rna-evm.model.Chr15.640 Chr15 18952878 18972415 PREDICTED: Centrosomal protein of 95 kDa GO:0000922;GO:0005813 K16544
gene-evm.TU.Chr15.641 rna-evm.model.Chr15.641 Chr15 18996484 19008040 PREDICTED: Beta-1,4-N-acetylgalactosaminyltransferase bre-4 GO:0005975;GO:0016757 K07968

For more detailed data, you can explore the Download section to access the full dataset.