CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr15.619 rna-evm.model.Chr15.619 Chr15 18220794 18222269 PREDICTED: acidic leucine-rich nuclear phosphoprotein 32 family member A/C/D GO:0003676 K15432
gene-evm.TU.Chr15.620 rna-evm.model.Chr15.620 Chr15 18222345 18235117 uncharacterized protein GO:0003677 K21405
gene-evm.TU.Chr15.623 rna-evm.model.Chr15.623 Chr15 18335882 18336952 PREDICTED: Sex peptide receptor GO:0004930;GO:0007186;GO:0008528;GO:0016020 K26200
gene-evm.TU.Chr15.624 rna-evm.model.Chr15.624 Chr15 18355575 18358989 uncharacterized protein nan K25527
gene-evm.TU.Chr15.625 rna-evm.model.Chr15.625 Chr15 18375673 18533104 PREDICTED: Dedicator of cytokinesis protein 4 GO:0005085;GO:0005515;GO:0007264 K05727
gene-evm.TU.Chr15.626 rna-evm.model.Chr15.626 Chr15 18536460 18557201 PREDICTED: Exportin-T GO:0000049;GO:0006409;GO:0031267;GO:0071528 K14288
gene-evm.TU.Chr15.627 rna-evm.model.Chr15.627 Chr15 18565620 18586563 PREDICTED: methyl-CpG-binding domain protein 4 [EC:3.2.2.-] nan K10801
gene-evm.TU.Chr15.628 rna-evm.model.Chr15.628 Chr15 18590449 18598028 PREDICTED: Probable 28S ribosomal protein S25, mitochondrial GO:0003735;GO:0005739 K17404
gene-evm.TU.Chr15.629 rna-evm.model.Chr15.629 Chr15 18598230 18616140 PREDICTED: Armadillo repeat-containing protein 10 nan K24167
gene-evm.TU.Chr15.63 rna-evm.model.Chr15.63 Chr15 1453477 1455782 PREDICTED: Probable E3 ubiquitin ligase SUD1 GO:0008270 K10657

For more detailed data, you can explore the Download section to access the full dataset.