CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr15.602 rna-evm.model.Chr15.602 Chr15 17493753 17521433 uncharacterized protein nan K13344
gene-evm.TU.Chr15.603 rna-evm.model.Chr15.603 Chr15 17578630 17583299 uncharacterized protein nan K19894
gene-evm.TU.Chr15.606 rna-evm.model.Chr15.606 Chr15 17697209 17705494 PREDICTED: Zinc finger CCHC-type and RNA-binding motif-containing protein 1 GO:0003676;GO:0008270 K13154
gene-evm.TU.Chr15.607 rna-evm.model.Chr15.607 Chr15 17705624 17758884 PREDICTED: Protein MON2 homolog GO:0015031 K26678
gene-evm.TU.Chr15.608 rna-evm.model.Chr15.608 Chr15 17826490 17847372 PREDICTED: Sex peptide receptor GO:0004930;GO:0007186;GO:0008528;GO:0016020 K26203
gene-evm.TU.Chr15.61 rna-evm.model.Chr15.61 Chr15 1437641 1437940 PREDICTED: Transposable element Tc3 transposase nan K07494
gene-evm.TU.Chr15.614 rna-evm.model.Chr15.614 Chr15 18064254 18110006 PREDICTED: Protein MON2 homolog GO:0015031 K26678
gene-evm.TU.Chr15.615 rna-evm.model.Chr15.615 Chr15 18117437 18125935 PREDICTED: Transforming growth factor-beta-induced protein ig-h3 nan K19519
gene-evm.TU.Chr15.616 rna-evm.model.Chr15.616 Chr15 18134615 18135709 PREDICTED: Sex peptide receptor GO:0004930;GO:0007186;GO:0008528;GO:0016020 K26200
gene-evm.TU.Chr15.618 rna-evm.model.Chr15.618 Chr15 18212003 18216668 PREDICTED: Sex peptide receptor GO:0004930;GO:0007186;GO:0008528;GO:0016020 K26200

For more detailed data, you can explore the Download section to access the full dataset.