CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr15.589 rna-evm.model.Chr15.589 Chr15 16913997 16920867 PREDICTED: Protein FAM8A1 nan nan
gene-evm.TU.Chr15.590 rna-evm.model.Chr15.590 Chr15 16921162 16975665 PREDICTED: Tyrosine-protein phosphatase non-receptor type 12 GO:0004725;GO:0006470;GO:0016311;GO:0016791 K18024
gene-evm.TU.Chr15.592_evm.TU.Chr15.591 rna-evm.model.Chr15.592_evm.model.Chr15.591 Chr15 16993521 17006613 uncharacterized protein nan K23489
gene-evm.TU.Chr15.596 rna-evm.model.Chr15.596 Chr15 17152658 17207291 PREDICTED: NIPA-like protein GO:0005634;GO:0008270 K03059
gene-evm.TU.Chr15.597 rna-evm.model.Chr15.597 Chr15 17209237 17211469 uncharacterized protein nan nan
gene-evm.TU.Chr15.598 rna-evm.model.Chr15.598 Chr15 17223977 17238387 PREDICTED: Transcription factor cwo GO:0003677;GO:0006355;GO:0046983 K27237
gene-evm.TU.Chr15.599 rna-evm.model.Chr15.599 Chr15 17424451 17440200 PREDICTED: colipase-like nan K14460
gene-evm.TU.Chr15.60 rna-evm.model.Chr15.60 Chr15 1436858 1437593 PREDICTED: Transposable element Tc1 transposase GO:0003677;GO:0006313;GO:0015074 K07499
gene-evm.TU.Chr15.600 rna-evm.model.Chr15.600 Chr15 17449896 17450769 PREDICTED: U3-aranetoxin-Ce1a-like nan K25493
gene-evm.TU.Chr15.601 rna-evm.model.Chr15.601 Chr15 17465857 17489244 uncharacterized protein nan K05128

For more detailed data, you can explore the Download section to access the full dataset.