CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr15.542 rna-evm.model.Chr15.542 Chr15 15350237 15351350 PREDICTED: DnaJ protein homolog nan K05801
gene-evm.TU.Chr15.543 rna-evm.model.Chr15.543 Chr15 15367081 15379894 PREDICTED: TBC1 domain family member 22B nan K20360
gene-evm.TU.Chr15.546 rna-evm.model.Chr15.546 Chr15 15376147 15376968 PREDICTED: codanin-1 nan K10395
gene-evm.TU.Chr15.547 rna-evm.model.Chr15.547.1 Chr15 15427799 15461603 PREDICTED: Nicolin-1 nan K16607
gene-evm.TU.Chr15.548 rna-evm.model.Chr15.548 Chr15 15469260 15480214 PREDICTED: F-actin-capping protein subunit alpha GO:0008290;GO:0051016 K10364
gene-evm.TU.Chr15.55 rna-evm.model.Chr15.55 Chr15 1384316 1385516 PREDICTED: cytochrome c oxidase assembly factor 6 nan K01245
gene-evm.TU.Chr15.550 rna-evm.model.Chr15.550 Chr15 15487393 15501210 uncharacterized protein GO:0005515 K24359
gene-evm.TU.Chr15.551 rna-evm.model.Chr15.551 Chr15 15503044 15505726 uncharacterized protein GO:0016491 K24858
gene-evm.TU.Chr15.554 rna-evm.model.Chr15.554 Chr15 15518114 15532694 PREDICTED: Cadherin-like and PC-esterase domain-containing protein 1 nan K03377
gene-evm.TU.Chr15.558_evm.TU.Chr15.559 rna-evm.model.Chr15.558_evm.model.Chr15.559 Chr15 15638520 15711254 PREDICTED: VWFA and cache domain-containing protein 1 nan K04860

For more detailed data, you can explore the Download section to access the full dataset.