CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr15.530 rna-evm.model.Chr15.530 Chr15 14985667 14988865 uncharacterized protein nan K06449
gene-evm.TU.Chr15.532 rna-evm.model.Chr15.532 Chr15 14994488 15000167 PREDICTED: Cadherin EGF LAG seven-pass G-type receptor 3 GO:0005509;GO:0007156;GO:0016020 K04600
gene-evm.TU.Chr15.533 rna-evm.model.Chr15.533 Chr15 15003113 15017537 PREDICTED: protein phosphatase 1 regulatory subunit 16A GO:0005515;GO:0007165 K21411
gene-evm.TU.Chr15.534 rna-evm.model.Chr15.534 Chr15 15061381 15076405 PREDICTED: Prestin GO:0008271;GO:0008272;GO:0015116;GO:0016020;GO:0016020;GO:0055085 K14703
gene-evm.TU.Chr15.535 rna-evm.model.Chr15.535 Chr15 15086031 15097380 PREDICTED: Atrial natriuretic peptide receptor 1 GO:0004383;GO:0006182;GO:0009190;GO:0016849;GO:0035556 K12324
gene-evm.TU.Chr15.536 rna-evm.model.Chr15.536 Chr15 15100233 15104976 PREDICTED: Periostin nan K19519
gene-evm.TU.Chr15.537 rna-evm.model.Chr15.537 Chr15 15106954 15115841 PREDICTED: NKG2-D type II integral membrane protein nan K06721
gene-evm.TU.Chr15.539 rna-evm.model.Chr15.539 Chr15 15163068 15163998 PREDICTED: protein kinase D [EC:2.7.11.13] nan K18585
gene-evm.TU.Chr15.540 rna-evm.model.Chr15.540 Chr15 15239442 15268063 PREDICTED: Atrial natriuretic peptide receptor 1 GO:0004672;GO:0005524;GO:0006468;GO:0009190;GO:0016020;GO:0016849;GO:0035556 K12323
gene-evm.TU.Chr15.541 rna-evm.model.Chr15.541 Chr15 15288224 15321341 PREDICTED: Nicotinamide phosphoribosyltransferase nan K03462

For more detailed data, you can explore the Download section to access the full dataset.