CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr15.481 rna-evm.model.Chr15.481 Chr15 13807773 13838012 PREDICTED: Complement control protein C3 nan K23815
gene-evm.TU.Chr15.482 rna-evm.model.Chr15.482 Chr15 13841443 13852276 PREDICTED: Threonine synthase-like 1 nan K06037
gene-evm.TU.Chr15.483 rna-evm.model.Chr15.483 Chr15 13861101 13885151 PREDICTED: Orexin receptor type 2 GO:0004930;GO:0007186;GO:0016020 K04238
gene-evm.TU.Chr15.484 rna-evm.model.Chr15.484 Chr15 13901142 13916467 PREDICTED: Actin-related protein 8 GO:0006338;GO:0031011 K11673
gene-evm.TU.Chr15.485 rna-evm.model.Chr15.485 Chr15 13918444 13923529 PREDICTED: Universal stress protein MJ0531 nan K06149
gene-evm.TU.Chr15.486 rna-evm.model.Chr15.486 Chr15 13927556 13931531 PREDICTED: Universal stress protein Sll1388 nan K06149
gene-evm.TU.Chr15.495 rna-evm.model.Chr15.495 Chr15 14071447 14074952 PREDICTED: cyclic GMP-AMP synthase [EC:2.7.7.86] nan K23092
gene-evm.TU.Chr15.496 rna-evm.model.Chr15.496 Chr15 14105571 14112981 PREDICTED: Proton myo-inositol cotransporter GO:0016020;GO:0016020;GO:0022857;GO:0055085 K08150
gene-evm.TU.Chr15.497 rna-evm.model.Chr15.497 Chr15 14116978 14125310 uncharacterized protein nan K11757
gene-evm.TU.Chr15.498 rna-evm.model.Chr15.498 Chr15 14129335 14130231 PREDICTED: Nuclear factor interleukin-3-regulated protein GO:0003700;GO:0006355 K09059

For more detailed data, you can explore the Download section to access the full dataset.