CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr15.499 rna-evm.model.Chr15.499 Chr15 14137484 14164146 uncharacterized protein nan K03985
gene-evm.TU.Chr15.50 rna-evm.model.Chr15.50 Chr15 1245094 1314021 PREDICTED: Synapsin GO:0007269;GO:0008021 K19941
gene-evm.TU.Chr15.500 rna-evm.model.Chr15.500 Chr15 14176763 14179441 PREDICTED: Aggrecan core protein nan K26094
gene-evm.TU.Chr15.501 rna-evm.model.Chr15.501 Chr15 14190273 14191691 PREDICTED: Beta-1,4-mannosyltransferase egh GO:0019187 K02359
gene-evm.TU.Chr15.503 rna-evm.model.Chr15.503 Chr15 14215030 14265813 PREDICTED: Coiled-coil domain-containing protein 162 nan nan
gene-evm.TU.Chr15.505 rna-evm.model.Chr15.505 Chr15 14329275 14353377 PREDICTED: Alpha-tocopherol transfer protein-like nan K19625
gene-evm.TU.Chr15.506 rna-evm.model.Chr15.506 Chr15 14365766 14366555 uncharacterized protein nan nan
gene-evm.TU.Chr15.507 rna-evm.model.Chr15.507 Chr15 14367129 14370672 uncharacterized protein nan K08545
gene-evm.TU.Chr15.508 rna-evm.model.Chr15.508 Chr15 14403703 14406202 uncharacterized protein nan K08545
gene-evm.TU.Chr15.51 rna-evm.model.Chr15.51 Chr15 1322151 1343225 PREDICTED: Twinfilin-1 GO:0003779;GO:0030837 K08870

For more detailed data, you can explore the Download section to access the full dataset.