CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr15.520 rna-evm.model.Chr15.520 Chr15 14634019 14649496 PREDICTED: Putative glycerol-3-phosphate transporter 3 GO:0016020;GO:0055085 K03447
gene-evm.TU.Chr15.521 rna-evm.model.Chr15.521 Chr15 14661099 14677131 PREDICTED: Slowpoke-binding protein GO:0003779 K17543
gene-evm.TU.Chr15.522 rna-evm.model.Chr15.522 Chr15 14684761 14704928 PREDICTED: Pelle-like serine/threonine-protein kinase pik-1 GO:0004672;GO:0005515;GO:0005524;GO:0006468;GO:0007165 K04730
gene-evm.TU.Chr15.523 rna-evm.model.Chr15.523 Chr15 14716691 14721972 PREDICTED: Caveolin-1 GO:0070836 K06278
gene-evm.TU.Chr15.524 rna-evm.model.Chr15.524 Chr15 14722861 14734412 PREDICTED: ATP synthase subunit gamma, mitochondrial GO:0015986;GO:0045261;GO:0046933 K02136
gene-evm.TU.Chr15.525 rna-evm.model.Chr15.525 Chr15 14760149 14807787 PREDICTED: FYVE, RhoGEF and PH domain-containing protein 4 GO:0005085;GO:0035023 K05723
gene-evm.TU.Chr15.527 rna-evm.model.Chr15.527 Chr15 14824640 14829013 uncharacterized protein nan K13300
gene-evm.TU.Chr15.528 rna-evm.model.Chr15.528 Chr15 14897224 14942358 PREDICTED: Regulator of nonsense transcripts 2 GO:0000184;GO:0003723;GO:0005515 K14327
gene-evm.TU.Chr15.529 rna-evm.model.Chr15.529 Chr15 14951533 14952745 uncharacterized protein nan K16499
gene-evm.TU.Chr15.53 rna-evm.model.Chr15.53 Chr15 1368006 1374192 uncharacterized protein nan K25694

For more detailed data, you can explore the Download section to access the full dataset.