CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr15.510 rna-evm.model.Chr15.510 Chr15 14443224 14447008 uncharacterized protein GO:0005509;GO:0005576;GO:0007160 nan
gene-evm.TU.Chr15.511 rna-evm.model.Chr15.511 Chr15 14447507 14450976 uncharacterized protein GO:0005509;GO:0005576;GO:0007160 K11057
gene-evm.TU.Chr15.512 rna-evm.model.Chr15.512 Chr15 14456720 14460971 PREDICTED: kyphoscoliosis peptidase-like GO:0005509;GO:0005576;GO:0007160 nan
gene-evm.TU.Chr15.513 rna-evm.model.Chr15.513 Chr15 14468323 14470225 PREDICTED: Zinc finger MYM-type protein 2 nan K24675
gene-evm.TU.Chr15.515 rna-evm.model.Chr15.515 Chr15 14477484 14521066 PREDICTED: Synaptophysin GO:0008021;GO:0016020 K09784
gene-evm.TU.Chr15.516 rna-evm.model.Chr15.516.3 Chr15 14527922 14574124 PREDICTED: Serine/threonine-protein kinase WNK1 GO:0004672;GO:0004674;GO:0005524;GO:0006468 K08867
gene-evm.TU.Chr15.517 rna-evm.model.Chr15.517.1 Chr15 14582160 14591836 PREDICTED: tRNA-dihydrouridine(20a/20b) synthase [NAD(P)+]-like GO:0008033;GO:0017150;GO:0050660;GO:0055114 K05545
gene-evm.TU.Chr15.518 rna-evm.model.Chr15.518 Chr15 14591863 14612619 PREDICTED: Conserved oligomeric Golgi complex subunit 5 GO:0006891;GO:0017119 K20292
gene-evm.TU.Chr15.519 rna-evm.model.Chr15.519 Chr15 14613976 14627218 PREDICTED: 4-hydroxybenzoate polyprenyltransferase, mitochondrial GO:0016020;GO:0016765 K06125
gene-evm.TU.Chr15.52 rna-evm.model.Chr15.52 Chr15 1348011 1361337 PREDICTED: Probable ATP-dependent RNA helicase DDX20 GO:0003676;GO:0005524 K13131

For more detailed data, you can explore the Download section to access the full dataset.