CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr15.471 rna-evm.model.Chr15.471 Chr15 13672382 13676075 uncharacterized protein GO:0042981 K10165
gene-evm.TU.Chr15.472 rna-evm.model.Chr15.472 Chr15 13676648 13682072 uncharacterized protein GO:0042981 K02084
gene-evm.TU.Chr15.474 rna-evm.model.Chr15.474 Chr15 13692827 13695963 PREDICTED: variable membrane protein precursor nan K13714
gene-evm.TU.Chr15.475 rna-evm.model.Chr15.475 Chr15 13702715 13707537 uncharacterized protein nan K03899
gene-evm.TU.Chr15.476 rna-evm.model.Chr15.476 Chr15 13716045 13731014 PREDICTED: Probable serine/threonine-protein kinase DDB_G0271402 GO:0004672;GO:0005524;GO:0006468 K04427
gene-evm.TU.Chr15.477 rna-evm.model.Chr15.477 Chr15 13734520 13735776 PREDICTED: solute carrier family 15, member 5 nan K07497
gene-evm.TU.Chr15.478 rna-evm.model.Chr15.478 Chr15 13741265 13744508 uncharacterized protein nan K10800
gene-evm.TU.Chr15.479 rna-evm.model.Chr15.479 Chr15 13751711 13786622 PREDICTED: Transmembrane protein adipocyte-associated 1 nan K22988
gene-evm.TU.Chr15.48 rna-evm.model.Chr15.48 Chr15 1222901 1223917 uncharacterized protein nan K26274
gene-evm.TU.Chr15.480 rna-evm.model.Chr15.480 Chr15 13789919 13804303 PREDICTED: Splicing factor 45 GO:0003676;GO:0043484 K12840

For more detailed data, you can explore the Download section to access the full dataset.