CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr15.458 rna-evm.model.Chr15.458 Chr15 13410644 13418779 PREDICTED: DNA-directed RNA polymerase II subunit RPB1 [EC:2.7.7.6] nan K06754
gene-evm.TU.Chr15.461 rna-evm.model.Chr15.461 Chr15 13420315 13423281 uncharacterized protein nan nan
gene-evm.TU.Chr15.463_evm.TU.Chr15.464 rna-evm.model.Chr15.463_evm.model.Chr15.464 Chr15 13452260 13478249 PREDICTED: DNA-directed RNA polymerase II subunit RPB1 [EC:2.7.7.6] nan nan
gene-evm.TU.Chr15.465 rna-evm.model.Chr15.465 Chr15 13482975 13488994 uncharacterized protein nan K19697
gene-evm.TU.Chr15.466 rna-evm.model.Chr15.466 Chr15 13489922 13501258 PREDICTED: Neurogenic locus notch homolog protein 1 GO:0005509 K20994
gene-evm.TU.Chr15.467 rna-evm.model.Chr15.467 Chr15 13506826 13508683 uncharacterized protein GO:0005509;GO:0005576;GO:0007160 nan
gene-evm.TU.Chr15.468 rna-evm.model.Chr15.468 Chr15 13514093 13592165 PREDICTED: Alpha-tocopherol transfer protein-like nan K19625
gene-evm.TU.Chr15.469 rna-evm.model.Chr15.469.1 Chr15 13605536 13643262 PREDICTED: Late embryogenesis abundant protein ECP63 GO:0000785;GO:0003677;GO:0005634;GO:0006355 K09283
gene-evm.TU.Chr15.47 rna-evm.model.Chr15.47 Chr15 1212568 1220425 PREDICTED: tRNA methyltransferase 10 homolog C GO:0005739;GO:0008033 K17654
gene-evm.TU.Chr15.470 rna-evm.model.Chr15.470 Chr15 13647253 13666041 PREDICTED: Gelsolin-like protein 2 GO:0051015 K05768

For more detailed data, you can explore the Download section to access the full dataset.