CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr15.449 rna-evm.model.Chr15.449 Chr15 12976602 13004099 PREDICTED: Dual serine/threonine and tyrosine protein kinase GO:0004672;GO:0005524;GO:0006468 K16288
gene-evm.TU.Chr15.45 rna-evm.model.Chr15.45 Chr15 1187407 1200153 PREDICTED: 39S ribosomal protein L9, mitochondrial GO:0003735;GO:0005840;GO:0006412 K02939
gene-evm.TU.Chr15.450 rna-evm.model.Chr15.450.1 Chr15 13013803 13063087 PREDICTED: Dystroglycan GO:0007016;GO:0016010;GO:0016020 K06265
gene-evm.TU.Chr15.451 rna-evm.model.Chr15.451 Chr15 13055096 13056177 PREDICTED: Endo-1,4-beta-xylanase B nan K26029
gene-evm.TU.Chr15.452 rna-evm.model.Chr15.452 Chr15 13064855 13070471 PREDICTED: Protein SPEC3 nan K17971
gene-evm.TU.Chr15.453 rna-evm.model.Chr15.453 Chr15 13071289 13095486 PREDICTED: Histone acetyltransferase KAT2A GO:0004402 K06062
gene-evm.TU.Chr15.454 rna-evm.model.Chr15.454 Chr15 13109764 13134616 PREDICTED: Histone acetyltransferase KAT2A GO:0004402 K06062
gene-evm.TU.Chr15.455 rna-evm.model.Chr15.455 Chr15 13302134 13330656 PREDICTED: Histone acetyltransferase KAT2A GO:0004402 K06062
gene-evm.TU.Chr15.456 rna-evm.model.Chr15.456 Chr15 13346082 13364871 PREDICTED: Histone acetyltransferase KAT2A GO:0004402;GO:0005515;GO:0005634;GO:0006355 K06062
gene-evm.TU.Chr15.457 rna-evm.model.Chr15.457 Chr15 13409342 13409671 uncharacterized protein nan nan

For more detailed data, you can explore the Download section to access the full dataset.