CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr15.432 rna-evm.model.Chr15.432 Chr15 12620160 12620360 uncharacterized protein nan K23799
gene-evm.TU.Chr15.433 rna-evm.model.Chr15.433 Chr15 12656260 12658061 PREDICTED: Hemoglobin-3 GO:0020037 K21894
gene-evm.TU.Chr15.434 rna-evm.model.Chr15.434 Chr15 12662952 12674353 PREDICTED: Hemoglobin-3 GO:0020037 K21894
gene-evm.TU.Chr15.438_evm.TU.Chr15.437 rna-evm.model.Chr15.438_evm.model.Chr15.437 Chr15 12798238 12821455 PREDICTED: TPR repeat-containing thioredoxin TDX GO:0005515 K09560
gene-evm.TU.Chr15.439 rna-evm.model.Chr15.439 Chr15 12822826 12824035 PREDICTED: Histone-lysine N-methyltransferase SETMAR GO:0005515;GO:0005634;GO:0008270;GO:0018024;GO:0034968 K11420
gene-evm.TU.Chr15.44 rna-evm.model.Chr15.44 Chr15 1180894 1186326 PREDICTED: Phosphoserine phosphatase nan K01079
gene-evm.TU.Chr15.441 rna-evm.model.Chr15.441 Chr15 12836815 12837141 PREDICTED: Caspase-2 GO:0004197;GO:0006508;GO:0042981;GO:0097200 K02186
gene-evm.TU.Chr15.444 rna-evm.model.Chr15.444 Chr15 12861044 12864015 PREDICTED: Carbohydrate sulfotransferase 5 GO:0008146 K01022
gene-evm.TU.Chr15.447 rna-evm.model.Chr15.447 Chr15 12909281 12913498 uncharacterized protein nan nan
gene-evm.TU.Chr15.448 rna-evm.model.Chr15.448 Chr15 12919612 12973523 PREDICTED: Putative helicase MOV-10 GO:0003723;GO:0032574;GO:0035194 K18422

For more detailed data, you can explore the Download section to access the full dataset.