CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr15.417 rna-evm.model.Chr15.417 Chr15 12174066 12207485 PREDICTED: Helicase ARIP4 GO:0005524 K10876
gene-evm.TU.Chr15.418 rna-evm.model.Chr15.418 Chr15 12227639 12253187 PREDICTED: Aminomethyltransferase, mitochondrial nan K00605
gene-evm.TU.Chr15.420 rna-evm.model.Chr15.420 Chr15 12265518 12267474 PREDICTED: Apolipoprotein L3 GO:0005576;GO:0006869;GO:0008289;GO:0042157 K14480
gene-evm.TU.Chr15.421 rna-evm.model.Chr15.421 Chr15 12291245 12307758 uncharacterized protein nan K06781
gene-evm.TU.Chr15.423 rna-evm.model.Chr15.423 Chr15 12325008 12326404 PREDICTED: BTB/POZ domain-containing protein KCTD1/15 nan K20189
gene-evm.TU.Chr15.424 rna-evm.model.Chr15.424 Chr15 12431610 12477666 uncharacterized protein nan K02159
gene-evm.TU.Chr15.429 rna-evm.model.Chr15.429 Chr15 12549935 12585528 PREDICTED: ER degradation-enhancing alpha-mannosidase-like protein 1 GO:0004571;GO:0005509;GO:0016020 K10084
gene-evm.TU.Chr15.43 rna-evm.model.Chr15.43 Chr15 1168986 1180156 PREDICTED: ER membrane protein complex subunit 3 GO:0016020 K23564
gene-evm.TU.Chr15.430 rna-evm.model.Chr15.430 Chr15 12585846 12596717 PREDICTED: Vezatin GO:0017022;GO:0098609 K25703
gene-evm.TU.Chr15.431 rna-evm.model.Chr15.431 Chr15 12599303 12607887 PREDICTED: Protein SEC13 homolog GO:0005198;GO:0005515;GO:0016192;GO:0030127;GO:0090114;GO:1904263 K14004

For more detailed data, you can explore the Download section to access the full dataset.