CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr15.407 rna-evm.model.Chr15.407 Chr15 11808393 11811621 PREDICTED: Coiled-coil domain-containing protein 51 nan K26469
gene-evm.TU.Chr15.408 rna-evm.model.Chr15.408 Chr15 11822780 11830666 PREDICTED: Putative ankyrin repeat protein MM_0045 GO:0005515 K21413
gene-evm.TU.Chr15.409 rna-evm.model.Chr15.409 Chr15 11902560 11904723 PREDICTED: Neuropeptides capa receptor GO:0004930;GO:0007186;GO:0016020 K04145
gene-evm.TU.Chr15.41 rna-evm.model.Chr15.41 Chr15 1162528 1164718 PREDICTED: ERI1 exoribonuclease 2 [EC:3.1.-.-] nan K04149
gene-evm.TU.Chr15.410 rna-evm.model.Chr15.410 Chr15 11917253 11918386 uncharacterized protein nan K04215
gene-evm.TU.Chr15.411_evm.TU.Chr15.412 rna-evm.model.Chr15.411_evm.model.Chr15.412 Chr15 11925211 11985656 PREDICTED: Probable Dol-P-Man:Man(7)GlcNAc(2)-PP-Dol alpha-1,6-mannosyltransferase GO:0005788;GO:0006488;GO:0016757;GO:0052917 K03847
gene-evm.TU.Chr15.413 rna-evm.model.Chr15.413 Chr15 12021343 12064754 PREDICTED: Dol-P-Man:Man(7)GlcNAc(2)-PP-Dol alpha-1,6-mannosyltransferase GO:0005788;GO:0006488;GO:0016757;GO:0052917 K03847
gene-evm.TU.Chr15.414 rna-evm.model.Chr15.414 Chr15 12088441 12125701 PREDICTED: Intraflagellar transport protein 122 homolog GO:0005515;GO:0060271 K19656
gene-evm.TU.Chr15.415 rna-evm.model.Chr15.415 Chr15 12129498 12152491 PREDICTED: Hephaestin-like protein 1 GO:0004322;GO:0005507;GO:0005615;GO:0006826;GO:0006879;GO:0016491;GO:0055114 K14735
gene-evm.TU.Chr15.416 rna-evm.model.Chr15.416 Chr15 12154207 12164596 PREDICTED: ATP-binding cassette, subfamily C (CFTR/MRP), member 4 nan K10632

For more detailed data, you can explore the Download section to access the full dataset.