CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr15.393 rna-evm.model.Chr15.393 Chr15 11508851 11509249 PREDICTED: protein kinase D [EC:2.7.11.13] nan K13367
gene-evm.TU.Chr15.395 rna-evm.model.Chr15.395 Chr15 11553134 11554117 PREDICTED: Lactose-binding lectin l-2 nan K10060
gene-evm.TU.Chr15.396 rna-evm.model.Chr15.396 Chr15 11587243 11593884 uncharacterized protein nan K05494
gene-evm.TU.Chr15.397 rna-evm.model.Chr15.397 Chr15 11601120 11602114 PREDICTED: Lactose-binding lectin l-2 nan K10060
gene-evm.TU.Chr15.398 rna-evm.model.Chr15.398 Chr15 11624318 11625580 PREDICTED: Neuronal acetylcholine receptor subunit alpha-7 GO:0004888;GO:0005216;GO:0005230;GO:0006811;GO:0016020;GO:0034220 K04808
gene-evm.TU.Chr15.399 rna-evm.model.Chr15.399 Chr15 11635339 11666939 PREDICTED: Carnitine O-palmitoyltransferase 2, mitochondrial GO:0016746 K08766
gene-evm.TU.Chr15.40 rna-evm.model.Chr15.40 Chr15 1157816 1159157 uncharacterized protein nan nan
gene-evm.TU.Chr15.400 rna-evm.model.Chr15.400 Chr15 11675282 11697906 PREDICTED: Protocadherin Fat 4 GO:0005509;GO:0007156;GO:0016020 K16669
gene-evm.TU.Chr15.402 rna-evm.model.Chr15.402 Chr15 11710047 11715538 PREDICTED: MAM and LDL-receptor class A domain-containing protein 1 (Fragment) GO:0016020 K06721
gene-evm.TU.Chr15.406 rna-evm.model.Chr15.406 Chr15 11768393 11805243 PREDICTED: Thioredoxin reductase 3 GO:0009055;GO:0015035;GO:0016491;GO:0045454;GO:0055114 K22182

For more detailed data, you can explore the Download section to access the full dataset.