CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr15.38 rna-evm.model.Chr15.38 Chr15 1133108 1133554 PREDICTED: Putative protein p47 GO:0000226;GO:0005516;GO:0005874;GO:0008017 K18419
gene-evm.TU.Chr15.380 rna-evm.model.Chr15.380 Chr15 10995977 11006381 PREDICTED: Neuropeptide FF receptor 2 GO:0004930;GO:0004983;GO:0007186;GO:0016020 K08375
gene-evm.TU.Chr15.382 rna-evm.model.Chr15.382 Chr15 11142268 11143692 uncharacterized protein nan nan
gene-evm.TU.Chr15.383 rna-evm.model.Chr15.383 Chr15 11143790 11144380 uncharacterized protein nan nan
gene-evm.TU.Chr15.385 rna-evm.model.Chr15.385 Chr15 11218736 11268995 PREDICTED: Hemicentin-1 nan K16857
gene-evm.TU.Chr15.386 rna-evm.model.Chr15.386 Chr15 11318225 11342608 PREDICTED: Uncharacterized protein C12orf56 homolog nan K24936
gene-evm.TU.Chr15.387 rna-evm.model.Chr15.387 Chr15 11350216 11357888 PREDICTED: Scavenger receptor class F member 1 nan K24068
gene-evm.TU.Chr15.388 rna-evm.model.Chr15.388 Chr15 11360916 11363497 uncharacterized protein GO:0005125;GO:0005576 K05493
gene-evm.TU.Chr15.389 rna-evm.model.Chr15.389 Chr15 11365915 11368790 PREDICTED: Sushi, von Willebrand factor type A, EGF and pentraxin domain-containing protein 1 nan K03906
gene-evm.TU.Chr15.391 rna-evm.model.Chr15.391 Chr15 11386726 11419788 uncharacterized protein GO:0005125;GO:0005576 K05494

For more detailed data, you can explore the Download section to access the full dataset.