CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr15.364 rna-evm.model.Chr15.364 Chr15 10359660 10363452 PREDICTED: Glutathione S-transferase Mu 3 GO:0005515 K23790
gene-evm.TU.Chr15.365 rna-evm.model.Chr15.365 Chr15 10366402 10370614 PREDICTED: Circumsporozoite protein nan K26024
gene-evm.TU.Chr15.366 rna-evm.model.Chr15.366 Chr15 10385548 10397970 PREDICTED: Nuclear respiratory factor 1 GO:0003700;GO:0006357 K11831
gene-evm.TU.Chr15.367 rna-evm.model.Chr15.367 Chr15 10418623 10447029 PREDICTED: Scm-like with four MBT domains protein 1 GO:0005515;GO:0005634;GO:0006355 K26269
gene-evm.TU.Chr15.368 rna-evm.model.Chr15.368 Chr15 10458957 10470849 PREDICTED: Ras-related protein Rab-43 GO:0003924;GO:0005525 K07930
gene-evm.TU.Chr15.369 rna-evm.model.Chr15.369 Chr15 10475712 10484649 uncharacterized protein nan K01989
gene-evm.TU.Chr15.37 rna-evm.model.Chr15.37 Chr15 1085740 1130706 PREDICTED: Protein Wnt-5a GO:0005102;GO:0005576;GO:0007275;GO:0016055 K00444
gene-evm.TU.Chr15.374 rna-evm.model.Chr15.374 Chr15 10644270 10670408 PREDICTED: G-protein coupled receptor GRL101 GO:0004930;GO:0005515;GO:0007186;GO:0016020;GO:0016500 K04307
gene-evm.TU.Chr15.376 rna-evm.model.Chr15.376 Chr15 10806019 10806891 PREDICTED: 52 kDa repressor of the inhibitor of the protein kinase GO:0046983 K24674
gene-evm.TU.Chr15.378 rna-evm.model.Chr15.378 Chr15 10854551 10854895 uncharacterized protein nan nan

For more detailed data, you can explore the Download section to access the full dataset.