CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr15.339 rna-evm.model.Chr15.339 Chr15 9635724 9639305 uncharacterized protein nan K22067
gene-evm.TU.Chr15.34 rna-evm.model.Chr15.34 Chr15 1018544 1033013 PREDICTED: Aminoacylase-1 GO:0016787 K14677
gene-evm.TU.Chr15.340 rna-evm.model.Chr15.340 Chr15 9643789 9646664 uncharacterized protein nan K22067
gene-evm.TU.Chr15.347 rna-evm.model.Chr15.347 Chr15 9726810 9727342 uncharacterized protein nan K26055
gene-evm.TU.Chr15.348 rna-evm.model.Chr15.348 Chr15 9753415 9754545 PREDICTED: Transposable element Tc1 transposase nan K07494
gene-evm.TU.Chr15.349 rna-evm.model.Chr15.349 Chr15 9806399 9820461 PREDICTED: Jerky protein homolog-like GO:0003677 K11496
gene-evm.TU.Chr15.35 rna-evm.model.Chr15.35 Chr15 1048593 1051199 PREDICTED: F-box/LRR-repeat protein 14 GO:0005515 K10280
gene-evm.TU.Chr15.351 rna-evm.model.Chr15.351 Chr15 9821294 9821677 uncharacterized protein nan K22644
gene-evm.TU.Chr15.352 rna-evm.model.Chr15.352 Chr15 9821758 9822246 uncharacterized protein nan nan
gene-evm.TU.Chr15.353 rna-evm.model.Chr15.353 Chr15 9924348 9936178 PREDICTED: Guanylate cyclase soluble subunit beta-2 GO:0004383;GO:0006182;GO:0009190;GO:0016849;GO:0020037;GO:0035556 K12319

For more detailed data, you can explore the Download section to access the full dataset.