CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr15.327 rna-evm.model.Chr15.327 Chr15 9427592 9430156 PREDICTED: Alpha-1A adrenergic receptor GO:0004930;GO:0007186;GO:0016020 K04238
gene-evm.TU.Chr15.328 rna-evm.model.Chr15.328 Chr15 9432360 9435377 PREDICTED: Neuropeptide Y receptor type 1 GO:0004930;GO:0007186;GO:0016020 K04238
gene-evm.TU.Chr15.329 rna-evm.model.Chr15.329 Chr15 9443334 9445892 PREDICTED: Cholecystokinin receptor GO:0004930;GO:0007186;GO:0016020 K04238
gene-evm.TU.Chr15.330 rna-evm.model.Chr15.330 Chr15 9447636 9458848 PREDICTED: Protein SSUH2 homolog nan K20047
gene-evm.TU.Chr15.331 rna-evm.model.Chr15.331 Chr15 9469080 9483408 PREDICTED: NACHT, LRR and PYD domains-containing protein 5 GO:0005515 K16634
gene-evm.TU.Chr15.332 rna-evm.model.Chr15.332 Chr15 9489860 9498280 PREDICTED: Cyclin-dependent kinase 20 GO:0004672;GO:0005524;GO:0006468 K08817
gene-evm.TU.Chr15.334 rna-evm.model.Chr15.334 Chr15 9513217 9522204 uncharacterized protein nan K25665
gene-evm.TU.Chr15.335 rna-evm.model.Chr15.335 Chr15 9524808 9526572 uncharacterized protein nan nan
gene-evm.TU.Chr15.336 rna-evm.model.Chr15.336 Chr15 9527986 9540724 PREDICTED: DALR anticodon-binding domain-containing protein 3 GO:0004814;GO:0005524;GO:0006420 K24973
gene-evm.TU.Chr15.337 rna-evm.model.Chr15.337 Chr15 9542928 9553378 PREDICTED: Protein Star nan K16381

For more detailed data, you can explore the Download section to access the full dataset.