CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr15.315 rna-evm.model.Chr15.315 Chr15 9216540 9217811 PREDICTED: sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) GO:0003676;GO:0003677;GO:0004523;GO:0009007;GO:0032775 nan
gene-evm.TU.Chr15.316 rna-evm.model.Chr15.316 Chr15 9246919 9259930 PREDICTED: Sodium- and chloride-dependent GABA transporter 2 GO:0016020 K05041
gene-evm.TU.Chr15.317 rna-evm.model.Chr15.317 Chr15 9271775 9280726 PREDICTED: U6 snRNA-associated Sm-like protein LSm3 GO:0003723 K12622
gene-evm.TU.Chr15.32 rna-evm.model.Chr15.32 Chr15 875309 918362 PREDICTED: Germinal-center associated nuclear protein nan K24317
gene-evm.TU.Chr15.321 rna-evm.model.Chr15.321 Chr15 9309730 9311859 PREDICTED: Transmembrane protein 229A nan K05336
gene-evm.TU.Chr15.322 rna-evm.model.Chr15.322 Chr15 9321112 9334280 uncharacterized protein nan K15411
gene-evm.TU.Chr15.323 rna-evm.model.Chr15.323 Chr15 9358024 9361340 PREDICTED: protein rolling stone-like nan K11617
gene-evm.TU.Chr15.324 rna-evm.model.Chr15.324 Chr15 9367155 9378464 uncharacterized protein nan K06518
gene-evm.TU.Chr15.325 rna-evm.model.Chr15.325 Chr15 9380416 9409825 PREDICTED: Neurogenic locus protein delta GO:0007154;GO:0007219;GO:0007275;GO:0016020;GO:0016020 K06051
gene-evm.TU.Chr15.326 rna-evm.model.Chr15.326 Chr15 9410735 9420113 PREDICTED: Neurogenic locus notch homolog protein 2 GO:0005509 K16681

For more detailed data, you can explore the Download section to access the full dataset.