CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr15.302 rna-evm.model.Chr15.302 Chr15 8842905 8854131 PREDICTED: Tafazzin GO:0006644;GO:0016746 K13511
gene-evm.TU.Chr15.303 rna-evm.model.Chr15.303 Chr15 8864069 8868391 uncharacterized protein nan K02107
gene-evm.TU.Chr15.304 rna-evm.model.Chr15.304 Chr15 8868523 8891801 PREDICTED: Zinc finger protein 37 GO:0003676;GO:0003677 K09191
gene-evm.TU.Chr15.305 rna-evm.model.Chr15.305 Chr15 8910188 8911343 PREDICTED: Zinc finger protein 862 GO:0046983 K08882
gene-evm.TU.Chr15.306 rna-evm.model.Chr15.306 Chr15 8911355 8914786 PREDICTED: Transmembrane protein C17orf113 nan K24642
gene-evm.TU.Chr15.307 rna-evm.model.Chr15.307 Chr15 8916647 8946066 PREDICTED: Ankyrin-1 GO:0005515 K04984
gene-evm.TU.Chr15.31 rna-evm.model.Chr15.31 Chr15 869257 869616 PREDICTED: RNA-directed DNA polymerase from mobile element jockey nan nan
gene-evm.TU.Chr15.311 rna-evm.model.Chr15.311 Chr15 9074058 9079610 uncharacterized protein nan nan
gene-evm.TU.Chr15.312 rna-evm.model.Chr15.312 Chr15 9151437 9164089 uncharacterized protein nan K00770
gene-evm.TU.Chr15.314 rna-evm.model.Chr15.314 Chr15 9214902 9215396 uncharacterized protein nan K27221

For more detailed data, you can explore the Download section to access the full dataset.