CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr15.289 rna-evm.model.Chr15.289 Chr15 8510901 8511812 PREDICTED: inner nuclear membrane protein Man1 nan K21233
gene-evm.TU.Chr15.29 rna-evm.model.Chr15.29 Chr15 830903 833887 PREDICTED: palmitoyltransferase ZDHHC13/17 [EC:2.3.1.225] GO:0003676 K13801
gene-evm.TU.Chr15.290 rna-evm.model.Chr15.290 Chr15 8511829 8513015 uncharacterized protein GO:0008270 K22525
gene-evm.TU.Chr15.292 rna-evm.model.Chr15.292 Chr15 8693222 8716558 PREDICTED: Interferon-inducible GTPase 1 GO:0005525;GO:0016020 K17072
gene-evm.TU.Chr15.294 rna-evm.model.Chr15.294 Chr15 8734799 8738470 PREDICTED: Interferon-inducible GTPase 1 GO:0005525;GO:0016020 K17072
gene-evm.TU.Chr15.295 rna-evm.model.Chr15.295 Chr15 8738551 8739039 PREDICTED: Interferon-inducible GTPase 5 GO:0005525;GO:0016020 K17072
gene-evm.TU.Chr15.296 rna-evm.model.Chr15.296 Chr15 8745577 8752155 PREDICTED: T-cell-specific guanine nucleotide triphosphate-binding protein 2 GO:0005525;GO:0016020 K17072
gene-evm.TU.Chr15.298 rna-evm.model.Chr15.298 Chr15 8758554 8762592 PREDICTED: Interferon-inducible GTPase 1 GO:0005525;GO:0016020 K17072
gene-evm.TU.Chr15.299 rna-evm.model.Chr15.299 Chr15 8775082 8790354 PREDICTED: muscle M-line assembly protein unc-89-like nan K13429
gene-evm.TU.Chr15.30 rna-evm.model.Chr15.30 Chr15 851218 852070 uncharacterized protein GO:0003676;GO:0008270 K09250

For more detailed data, you can explore the Download section to access the full dataset.