CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr15.277 rna-evm.model.Chr15.277 Chr15 8175212 8182276 PREDICTED: Guanylate cyclase 32E GO:0004383;GO:0006182;GO:0009190;GO:0016849;GO:0035556 K12324
gene-evm.TU.Chr15.278 rna-evm.model.Chr15.278 Chr15 8184738 8192760 PREDICTED: Polyglutamine-binding protein 1 GO:0005515 K12865
gene-evm.TU.Chr15.279 rna-evm.model.Chr15.279 Chr15 8199554 8236862 PREDICTED: Serine/threonine-protein kinase B-raf GO:0004672;GO:0005524;GO:0006468;GO:0007165;GO:0035556 K04365
gene-evm.TU.Chr15.28 rna-evm.model.Chr15.28 Chr15 809589 809941 PREDICTED: solute carrier family 5 (sodium-dependent multivitamin transporter), member 6 nan nan
gene-evm.TU.Chr15.280_evm.TU.Chr15.282 rna-evm.model.Chr15.280_evm.model.Chr15.282 Chr15 8244793 8307775 PREDICTED: Prickle-like protein 2 GO:0008270 K04511
gene-evm.TU.Chr15.281 rna-evm.model.Chr15.281 Chr15 8287096 8290553 PREDICTED: Zinc finger protein 862 GO:0046983 K24644
gene-evm.TU.Chr15.283 rna-evm.model.Chr15.283 Chr15 8318072 8333328 PREDICTED: Solute carrier family 35 member E3 nan K15285
gene-evm.TU.Chr15.284 rna-evm.model.Chr15.284 Chr15 8349314 8349580 uncharacterized protein nan nan
gene-evm.TU.Chr15.287 rna-evm.model.Chr15.287 Chr15 8497728 8509474 uncharacterized protein nan K25773
gene-evm.TU.Chr15.288 rna-evm.model.Chr15.288 Chr15 8509525 8510250 PREDICTED: THAP domain-containing protein 11 nan K23222

For more detailed data, you can explore the Download section to access the full dataset.