CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr15.257 rna-evm.model.Chr15.257 Chr15 7665209 7669467 PREDICTED: Hillarin nan K23026
gene-evm.TU.Chr15.258 rna-evm.model.Chr15.258 Chr15 7691367 7757504 PREDICTED: Interferon-induced protein 44-like nan K21841
gene-evm.TU.Chr15.259 rna-evm.model.Chr15.259 Chr15 7763325 7767852 PREDICTED: Interferon-induced protein 44-like nan K06946
gene-evm.TU.Chr15.26 rna-evm.model.Chr15.26 Chr15 735979 743162 PREDICTED: Alanine aminotransferase 2 GO:0009058;GO:0030170 K00814
gene-evm.TU.Chr15.260 rna-evm.model.Chr15.260 Chr15 7788018 7797706 PREDICTED: Interferon-induced protein 44 nan K21841
gene-evm.TU.Chr15.261 rna-evm.model.Chr15.261 Chr15 7798923 7850270 PREDICTED: Calcium-activated chloride channel regulator 1 nan K05027
gene-evm.TU.Chr15.262 rna-evm.model.Chr15.262 Chr15 7851256 7867086 PREDICTED: Calcium-activated chloride channel regulator 1 nan K05027
gene-evm.TU.Chr15.263 rna-evm.model.Chr15.263 Chr15 7876218 7882451 PREDICTED: Kappa-type opioid receptor GO:0004930;GO:0007186;GO:0016020 K04194
gene-evm.TU.Chr15.264 rna-evm.model.Chr15.264 Chr15 7889026 7890189 PREDICTED: Cysteinyl leukotriene receptor 1 GO:0004930;GO:0007186;GO:0016020 K04238
gene-evm.TU.Chr15.265 rna-evm.model.Chr15.265 Chr15 7890268 7904227 PREDICTED: Serine/threonine-protein kinase STY46 GO:0004672;GO:0005524;GO:0006468 K04427

For more detailed data, you can explore the Download section to access the full dataset.