CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr15.248 rna-evm.model.Chr15.248 Chr15 7450890 7453192 PREDICTED: RNA-directed DNA polymerase from mobile element jockey nan K26653
gene-evm.TU.Chr15.249 rna-evm.model.Chr15.249 Chr15 7449817 7460901 PREDICTED: Mannose-1-phosphate guanyltransferase beta GO:0009058;GO:0016779 K00966
gene-evm.TU.Chr15.25 rna-evm.model.Chr15.25 Chr15 724292 726399 PREDICTED: PI-PLC X domain-containing protein 2 nan K01771
gene-evm.TU.Chr15.250 rna-evm.model.Chr15.250 Chr15 7482670 7490542 uncharacterized protein nan K06449
gene-evm.TU.Chr15.251 rna-evm.model.Chr15.251 Chr15 7503174 7563541 PREDICTED: DDB1- and CUL4-associated factor 1 GO:0005515;GO:0016567 K11789
gene-evm.TU.Chr15.252 rna-evm.model.Chr15.252 Chr15 7575715 7580221 PREDICTED: Small integral membrane protein 29 nan K16350
gene-evm.TU.Chr15.253 rna-evm.model.Chr15.253 Chr15 7580684 7584735 uncharacterized protein nan K19909
gene-evm.TU.Chr15.254 rna-evm.model.Chr15.254 Chr15 7584742 7589986 PREDICTED: UBX domain-containing protein 6 GO:0005515 K14011
gene-evm.TU.Chr15.255 rna-evm.model.Chr15.255 Chr15 7594924 7607242 PREDICTED: Selenide, water dikinase GO:0005524 K01008
gene-evm.TU.Chr15.256 rna-evm.model.Chr15.256 Chr15 7609018 7648955 PREDICTED: GRAM domain-containing protein 4 GO:0006915 K23554

For more detailed data, you can explore the Download section to access the full dataset.