CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr15.222 rna-evm.model.Chr15.222 Chr15 6407196 6408509 uncharacterized protein nan nan
gene-evm.TU.Chr15.223 rna-evm.model.Chr15.223 Chr15 6410469 6460733 PREDICTED: DNA-binding protein P3A2 GO:0003700;GO:0005509;GO:0006357 K11831
gene-evm.TU.Chr15.226 rna-evm.model.Chr15.226 Chr15 6558378 6633198 PREDICTED: sarcoplasmic calcium-binding proteins II, V, VI, and VII nan K15825
gene-evm.TU.Chr15.229 rna-evm.model.Chr15.229 Chr15 6667486 6694390 PREDICTED: Lysine-specific demethylase 5A GO:0003677 K11446
gene-evm.TU.Chr15.23 rna-evm.model.Chr15.23 Chr15 707576 716121 PREDICTED: probable cyclin-dependent serine/threonine-protein kinase DDB_G0292550, partial nan nan
gene-evm.TU.Chr15.230 rna-evm.model.Chr15.230 Chr15 6703853 6715033 PREDICTED: Coiled-coil domain-containing protein 77 nan K16757
gene-evm.TU.Chr15.231 rna-evm.model.Chr15.231 Chr15 6727238 6738501 PREDICTED: 3-hydroxyacyl-CoA dehydrogenase type-2 nan K08683
gene-evm.TU.Chr15.232 rna-evm.model.Chr15.232 Chr15 6745702 6754742 PREDICTED: Ataxin-10 nan K19323
gene-evm.TU.Chr15.233 rna-evm.model.Chr15.233 Chr15 6764364 6821632 PREDICTED: Protein Wnt-7b GO:0005102;GO:0005576;GO:0007275;GO:0016055 K00572
gene-evm.TU.Chr15.234 rna-evm.model.Chr15.234 Chr15 6843493 6881649 PREDICTED: N-lysine methyltransferase KMT5A GO:0005515 K11428

For more detailed data, you can explore the Download section to access the full dataset.