CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr15.219 rna-evm.model.Chr15.219 Chr15 6381841 6397083 PREDICTED: Transposon TX1 uncharacterized 149 kDa protein nan K01142
gene-evm.TU.Chr15.2190 rna-evm.model.Chr15.2190 Chr15 65074314 65085433 uncharacterized protein nan nan
gene-evm.TU.Chr15.2191 rna-evm.model.Chr15.2191 Chr15 65088058 65100032 PREDICTED: Nitrilase and fragile histidine triad fusion protein NitFhit GO:0003824;GO:0006807 K11206
gene-evm.TU.Chr15.2192 rna-evm.model.Chr15.2192.2 Chr15 65105154 65173574 PREDICTED: Plasma membrane calcium-transporting ATPase 3 GO:0005388;GO:0005524;GO:0016020;GO:0070588 K05850
gene-evm.TU.Chr15.2193 rna-evm.model.Chr15.2193 Chr15 65204018 65241655 PREDICTED: Neuroglian GO:0005515 K06756
gene-evm.TU.Chr15.2195 rna-evm.model.Chr15.2195 Chr15 65379463 65436267 PREDICTED: Plexin-A4 GO:0004672;GO:0004713;GO:0005515;GO:0006468 K05099
gene-evm.TU.Chr15.2196 rna-evm.model.Chr15.2196 Chr15 65454604 65472428 PREDICTED: Plexin-A2 GO:0005515;GO:0017154;GO:0071526 K05099
gene-evm.TU.Chr15.2198 rna-evm.model.Chr15.2198 Chr15 65494459 65496540 PREDICTED: Tyrosine-protein kinase transforming protein SEA GO:0004672;GO:0005524;GO:0006468 K05099
gene-evm.TU.Chr15.22 rna-evm.model.Chr15.22 Chr15 704317 707527 uncharacterized protein nan nan
gene-evm.TU.Chr15.220 rna-evm.model.Chr15.220 Chr15 6397085 6400191 uncharacterized protein nan K13899

For more detailed data, you can explore the Download section to access the full dataset.