CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr15.2172 rna-evm.model.Chr15.2172 Chr15 64320237 64332610 PREDICTED: D-3-phosphoglycerate dehydrogenase GO:0051287;GO:0055114 K12972
gene-evm.TU.Chr15.2173 rna-evm.model.Chr15.2173 Chr15 64349264 64395208 PREDICTED: Host cell factor 1 GO:0005515;GO:0005520;GO:0005576 K14966
gene-evm.TU.Chr15.2175 rna-evm.model.Chr15.2175 Chr15 64446880 64449528 PREDICTED: Peritrophin-1 GO:0005576;GO:0006030;GO:0008061 K05108
gene-evm.TU.Chr15.2176 rna-evm.model.Chr15.2176 Chr15 64457859 64468410 PREDICTED: 39S ribosomal protein L2, mitochondrial GO:0003735;GO:0005840;GO:0006412 K02886
gene-evm.TU.Chr15.2177 rna-evm.model.Chr15.2177 Chr15 64476130 64476807 PREDICTED: U6 snRNA-associated Sm-like protein LSm8 nan K12627
gene-evm.TU.Chr15.2178 rna-evm.model.Chr15.2178 Chr15 64489140 64506906 uncharacterized protein nan nan
gene-evm.TU.Chr15.2179 rna-evm.model.Chr15.2179 Chr15 64510333 64511094 PREDICTED: DNA-directed RNA polymerase II subunit RPB1 [EC:2.7.7.6] nan nan
gene-evm.TU.Chr15.2182 rna-evm.model.Chr15.2182 Chr15 64860978 64873976 PREDICTED: Protocadherin Fat 4 GO:0005509 K02599
gene-evm.TU.Chr15.2187 rna-evm.model.Chr15.2187 Chr15 64980373 64981686 PREDICTED: CD109 antigen nan K06674
gene-evm.TU.Chr15.2189 rna-evm.model.Chr15.2189 Chr15 65069787 65074304 PREDICTED: universal stress protein in QAH:OAS nan K06149

For more detailed data, you can explore the Download section to access the full dataset.